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宫盼盼,陈 浩,宋成祥,许书豪,张 杏,茆海亮.小麦 DA1基因家族成员的鉴定及其表达谱分析[J].麦类作物学报,2022,(6):659
小麦 DA1基因家族成员的鉴定及其表达谱分析
Identification and Expression Profile Analysis of DA1 Gene Family in Wheat
  
DOI:10.7606/j.issn.1009-1041.2022.06.02
中文关键词:  小麦   DA1基因家族  生物信息学  基因表达  蛋白互作
英文关键词:Wheat   DA1 gene family  Bioinformatics  Gene expression  Protein interaction
基金项目:中央高校基本科研业务费专项(11041810314)
作者单位
宫盼盼,陈 浩,宋成祥,许书豪,张 杏,茆海亮 (华中农业大学作物遗传改良国家重点实验室/华中农业大学植物科学技术学院湖北武汉 430070) 
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中文摘要:
      泛素受体DA1在控制种子和器官大小上发挥着重要作用。本研究以中国春小麦为材料,采用生物信息学的方法对小麦 DA1基因家族成员进行了全基因组鉴定和分析,共鉴定到12个小麦 DA1同源基因( TaDA1s),分别位于2B、2D、4A、4B、4D、5A、5B和5D染色体上,亚细胞定位预测结果表明其位于细胞核中。系统进化分析发现, TaDA1s可分为 TaDA1 TaDAR1 TaDAR2三类。除TaDA1-2D1编码的蛋白只含有DA1-like结构域外,其他成员编码的蛋白均含有DA1-like、UIM和LIM结构域。启动子序列分析发现, TaDA1s的启动子区含有较多的响应激素、逆境以及与生长发育相关的顺式作用元件。通过公共的转录组数据和qRT-PCR试验验证, 发现 TaDA1s在不同组织中都有表达,在籽粒发育过程中,不同的小麦 DA1基因呈现不同的表达模式,暗示存在基因功能分化现象;脱落酸(ABA)能够抑制 TaDA1s的表达;在低温和盐胁迫条件下, TaDA1s基因表达有明显的差异。酵母双杂交和荧光素酶互补试验发现,TaDA1-2B、TaDAR1-5A和TaGW2存在转录自激活现象,且TaDAR1-5A与TaGW2有微弱的互作效应。本研究结果为进一步探究 DA1基因家族在小麦中的生物学功能奠定了基础。
英文摘要:
      The ubiquitin receptor DA1 plays an important role in controlling the size of seeds and organs. In this study,the DA1 gene was identified from the whole wheat genome of wheat Chinese Spring and analyzed by bioinformatics. A total of 12 wheat DA1 homologous genes were identified in the wheat genome,which were located on chromosomes 2B,2D,4A,4B,4D,5A,5B and 5D. The subcellular prediction was performed that they were localized in nucleus. According to phylogenetic analysis, TaDA1s were divided into three categories: TaDA1, TaDAR1 and TaDAR2.Except for the TaDA1-2D1 protein only containing the DA1-like domain,the other members contained DA1-like,UIM and LIM domains.Sequence analysis showed that the promoter region of TaDA1s contained known motifs related to hormones and environmental response,and growth and development.Through public transcriptomic data and qRT-PCR experiments,it was shown that TaDA1s genes were expressed among different tissues. Interestingly,some TaDA1s showed different expression patterns during grain development. ABA could inhibit the expression of TaDA1s.In addition,they were also responsive to low temperature and salt treatment. It was shown that TaDA1-2B,TaDAR1-5A and TaGW2 has transcriptional auto-activation by yeast two hybrid system.Further,luciferase complementation experiment was employed to show there was weak interaction between TaDAR1-5A and TaGW2. In summary,our results lay a foundation for further exploring the biological functions of the DA1 gene family in wheat.
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